IL_4V7R_478

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUAGUAC*GGAACA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_478 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.2761

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V7R|1|D1|U|3019
4V7R|1|D1|U|3020
4V7R|1|D1|A|3021
4V7R|1|D1|G|3022
4V7R|1|D1|U|3023
4V7R|1|D1|A|3024
4V7R|1|D1|C|3025
*
4V7R|1|D1|G|3030
4V7R|1|D1|G|3031
4V7R|1|D1|A|3032
4V7R|1|D1|A|3033
4V7R|1|D1|C|3034
4V7R|1|D1|A|3035

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DI

60S ribosomal protein L9-A