IL_4V7R_516

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V7R|1|B1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_516 not in the Motif Atlas

Homologous match to IL_8P9A_323

Geometric discrepancy: 0.3201

The information below is about IL_8P9A_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

4V7R|1|B1|U|2423
4V7R|1|B1|A|2424
4V7R|1|B1|G|2425
*
4V7R|1|B1|U|2604
4V7R|1|B1|G|2605
4V7R|1|B1|G|2606
4V7R|1|B1|G|2607

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L2

Chain BO

60S ribosomal protein L15-A

Chain Bf

60S ribosomal protein L42