IL_4V7R_525

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUUG*CAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7R_525 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2919

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

4V7R|1|C1|U|748
4V7R|1|C1|U|749
4V7R|1|C1|U|750
4V7R|1|C1|G|751
*
4V7R|1|C1|C|798
4V7R|1|C1|A|799
4V7R|1|C1|U|800
4V7R|1|C1|G|801

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CF

40S ribosomal protein S11

Chain CO

40S ribosomal protein S22-A