IL_4V7S_154

3D structure

PDB id

4V7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7S_154 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.1945

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V7S|1|BA|C|2103
4V7S|1|BA|C|2104
4V7S|1|BA|U|2105
*
4V7S|1|BA|A|2184
4V7S|1|BA|U|2185
4V7S|1|BA|G|2186

Current chains

Chain BA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA