IL_4V7S_255

3D structure

PDB id

4V7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7S_255 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.1086

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V7S|1|CA|A|1430
4V7S|1|CA|A|1431
4V7S|1|CA|G|1432
4V7S|1|CA|A|1433
4V7S|1|CA|A|1434
4V7S|1|CA|G|1435
*
4V7S|1|CA|C|1466
4V7S|1|CA|C|1467
4V7S|1|CA|A|1468
4V7S|1|CA|C|1469
4V7S|1|CA|U|1470

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DP

50S ribosomal protein L19