IL_4V7U_378

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4V7U|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_378 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1411

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4V7U|1|AA|U|684
4V7U|1|AA|G|685
4V7U|1|AA|U|686
4V7U|1|AA|A|687
4V7U|1|AA|G|688
*
4V7U|1|AA|C|699
4V7U|1|AA|G|700
4V7U|1|AA|U|701
4V7U|1|AA|A|702
4V7U|1|AA|G|703
4V7U|1|AA|A|704
4V7U|1|AA|G|705
4V7U|1|AA|A|706

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA