IL_4V7U_397

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

4V7U|1|DA|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7U_397 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2126

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V7U|1|DA|G|35
4V7U|1|DA|G|36
4V7U|1|DA|C|37
*
4V7U|1|DA|G|442
4V7U|1|DA|A|443
4V7U|1|DA|C|444
4V7U|1|DA|C|445

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DQ

50S ribosomal protein L20