3D structure

PDB id
4V7W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4V7W|1|CA|A|532, 4V7W|1|CA|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7W_196 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1462
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4V7W|1|CA|G|515
4V7W|1|CA|U|516
4V7W|1|CA|G|517
4V7W|1|CA|C|518
4V7W|1|CA|C|519
4V7W|1|CA|A|520
4V7W|1|CA|G|521
*
4V7W|1|CA|C|528
4V7W|1|CA|G|529
4V7W|1|CA|G|530
4V7W|1|CA|U|531
4V7W|1|CA|A|532
4V7W|1|CA|A|533
4V7W|1|CA|U|534
4V7W|1|CA|A|535
4V7W|1|CA|C|536

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CC
30S ribosomal protein S3
Chain CD
30S ribosomal protein S4
Chain CL
30S ribosomal protein S12

Coloring options:


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