IL_4V7W_366

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAG*CGCC

Length

9 nucleotides

Bulged bases

4V7W|1|DA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7W_366 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3988

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V7W|1|DA|G|1487
4V7W|1|DA|G|1488
4V7W|1|DA|U|1489
4V7W|1|DA|A|1490
4V7W|1|DA|G|1491
*
4V7W|1|DA|C|1499
4V7W|1|DA|G|1500
4V7W|1|DA|C|1501
4V7W|1|DA|C|1502

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L2