IL_4V7Y_025

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V7Y|1|AA|A|532, 4V7Y|1|AA|U|534, 4V7Y|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1515

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V7Y|1|AA|G|515
4V7Y|1|AA|U|516
4V7Y|1|AA|G|517
4V7Y|1|AA|C|518
4V7Y|1|AA|C|519
4V7Y|1|AA|A|520
4V7Y|1|AA|G|521
*
4V7Y|1|AA|C|528
4V7Y|1|AA|G|529
4V7Y|1|AA|G|530
4V7Y|1|AA|U|531
4V7Y|1|AA|A|532
4V7Y|1|AA|A|533
4V7Y|1|AA|U|534
4V7Y|1|AA|A|535
4V7Y|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12