IL_4V7Y_045

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGG*UCAGCA

Length

9 nucleotides

Bulged bases

4V7Y|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7Y_045 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.2316

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V7Y|1|AA|U|1056
4V7Y|1|AA|G|1057
4V7Y|1|AA|G|1058
*
4V7Y|1|AA|U|1199
4V7Y|1|AA|C|1200
4V7Y|1|AA|A|1201
4V7Y|1|AA|G|1202
4V7Y|1|AA|C|1203
4V7Y|1|AA|A|1204

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14