IL_4V80_206

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V80|1|CA|A|532, 4V80|1|CA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V80_206 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2594

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V80|1|CA|G|515
4V80|1|CA|U|516
4V80|1|CA|G|517
4V80|1|CA|C|518
4V80|1|CA|C|519
4V80|1|CA|A|520
4V80|1|CA|G|521
*
4V80|1|CA|C|528
4V80|1|CA|G|529
4V80|1|CA|G|530
4V80|1|CA|U|531
4V80|1|CA|A|532
4V80|1|CA|A|533
4V80|1|CA|U|534
4V80|1|CA|A|535
4V80|1|CA|C|536

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12