IL_4V83_194

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V83|1|CA|A|532, 4V83|1|CA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V83_194 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1678

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V83|1|CA|G|515
4V83|1|CA|U|516
4V83|1|CA|G|517
4V83|1|CA|C|518
4V83|1|CA|C|519
4V83|1|CA|A|520
4V83|1|CA|G|521
*
4V83|1|CA|C|528
4V83|1|CA|G|529
4V83|1|CA|G|530
4V83|1|CA|U|531
4V83|1|CA|A|532
4V83|1|CA|A|533
4V83|1|CA|U|534
4V83|1|CA|A|535
4V83|1|CA|C|536

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CL

30S ribosomal protein S12