IL_4V84_206

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAUG*UGAC

Length

10 nucleotides

Bulged bases

4V84|1|CA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V84_206 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2082

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V84|1|CA|G|371
4V84|1|CA|C|372
4V84|1|CA|A|373
4V84|1|CA|A|374
4V84|1|CA|U|375
4V84|1|CA|G|376
*
4V84|1|CA|U|387
4V84|1|CA|G|388
4V84|1|CA|A|389
4V84|1|CA|C|390

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CP

30S ribosomal protein S16