IL_4V85_030

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V85|1|AA|A|532, 4V85|1|AA|U|534, 4V85|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_030 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1725

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V85|1|AA|G|515
4V85|1|AA|U|516
4V85|1|AA|G|517
4V85|1|AA|C|518
4V85|1|AA|C|519
4V85|1|AA|A|520
4V85|1|AA|G|521
*
4V85|1|AA|C|528
4V85|1|AA|G|529
4V85|1|AA|G|530
4V85|1|AA|U|531
4V85|1|AA|A|532
4V85|1|AA|A|533
4V85|1|AA|U|534
4V85|1|AA|A|535
4V85|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12 1