IL_4V85_107

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V85|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V85_107 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1459

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V85|1|BA|U|1018
4V85|1|BA|U|1019
4V85|1|BA|A|1020
4V85|1|BA|A|1021
4V85|1|BA|G|1022
4V85|1|BA|U|1023
4V85|1|BA|G|1024
*
4V85|1|BA|C|1140
4V85|1|BA|U|1141
4V85|1|BA|A|1142
4V85|1|BA|A|1143
4V85|1|BA|A|1144

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L36 1

Chain BG

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13