3D structure

PDB id
4V85 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGUUC*GGUAG
Length
10 nucleotides
Bulged bases
4V85|1|BA|U|2689, 4V85|1|BA|U|2690
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V85_172 not in the Motif Atlas
Homologous match to IL_5J7L_348
Geometric discrepancy: 0.0747
The information below is about IL_5J7L_348
Detailed Annotation
UAA/GAN related, with intercalation
Broad Annotation
UAA/GAN related, with intercalation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

4V85|1|BA|U|2687
4V85|1|BA|G|2688
4V85|1|BA|U|2689
4V85|1|BA|U|2690
4V85|1|BA|C|2691
*
4V85|1|BA|G|2718
4V85|1|BA|G|2719
4V85|1|BA|U|2720
4V85|1|BA|A|2721
4V85|1|BA|G|2722

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BD
50S ribosomal protein L3
Chain BR
50S ribosomal protein L17
Chain BT
50S ribosomal protein L19

Coloring options:


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