IL_4V88_048
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 4V88|1|A1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_048 not in the Motif Atlas
- Homologous match to IL_5TBW_048
- Geometric discrepancy: 0.0642
- The information below is about IL_5TBW_048
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V88|1|A1|U|1167
4V88|1|A1|U|1168
4V88|1|A1|A|1169
4V88|1|A1|A|1170
4V88|1|A1|G|1171
*
4V88|1|A1|C|1328
4V88|1|A1|U|1329
4V88|1|A1|A|1330
4V88|1|A1|U|1331
4V88|1|A1|A|1332
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 60S ribosomal protein L7-A
- Chain BQ
- 60S ribosomal protein L18-A
- Chain Be
- 60S ribosomal protein L32
- Chain Bf
- 60S ribosomal protein L33-A
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