IL_4V88_055

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

4V88|1|A1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_055 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5729

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4V88|1|A1|G|1234
4V88|1|A1|U|1235
4V88|1|A1|G|1236
4V88|1|A1|G|1237
4V88|1|A1|C|1238
*
4V88|1|A1|G|1250
4V88|1|A1|A|1251
4V88|1|A1|A|1252
4V88|1|A1|U|1253
4V88|1|A1|C|1254

Current chains

Chain A1

25S rRNA

Nearby chains