IL_4V88_118

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

4V88|1|A1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_118 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.0602

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V88|1|A1|U|3047
4V88|1|A1|A|3048
4V88|1|A1|A|3049
4V88|1|A1|U|3050
4V88|1|A1|U|3051
*
4V88|1|A1|A|3091
4V88|1|A1|C|3092
4V88|1|A1|C|3093
4V88|1|A1|A|3094

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BV

60S ribosomal protein L23-A

Chain BW

60S ribosomal protein L24-A