IL_4V88_121
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 4V88|1|A1|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_121 not in the Motif Atlas
- Homologous match to IL_5TBW_120
- Geometric discrepancy: 0.0496
- The information below is about IL_5TBW_120
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V88|1|A1|A|3103
4V88|1|A1|U|3104
4V88|1|A1|U|3105
4V88|1|A1|A|3106
4V88|1|A1|U|3107
*
4V88|1|A1|A|3127
4V88|1|A1|G|3128
4V88|1|A1|A|3129
4V88|1|A1|A|3130
4V88|1|A1|U|3131
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BH
- 60S ribosomal protein L9-A
- Chain BO
- 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
- Chain Bm
- 60S ribosomal protein L40
Coloring options: