IL_4V88_133

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

4V88|1|A1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_133 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.0662

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V88|1|A1|G|3328
4V88|1|A1|U|3329
4V88|1|A1|A|3330
*
4V88|1|A1|U|3373
4V88|1|A1|U|3374
4V88|1|A1|A|3375
4V88|1|A1|A|3376
4V88|1|A1|G|3377
4V88|1|A1|C|3378

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BW

60S ribosomal protein L24-A

Chain Bd

60S ribosomal protein L31-A