IL_4V88_171
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 4V88|1|A2|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_171 not in the Motif Atlas
- Homologous match to IL_4V88_416
- Geometric discrepancy: 0.0703
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A2|G|616
4V88|1|A2|U|617
4V88|1|A2|U|618
4V88|1|A2|A|619
4V88|1|A2|A|620
4V88|1|A2|A|621
4V88|1|A2|A|622
*
4V88|1|A2|U|1104
4V88|1|A2|C|1105
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AX
- 40S ribosomal protein S23-A
- Chain Aa
- 40S ribosomal protein S26-A
Coloring options: