IL_4V88_186
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 4V88|1|A2|G|876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_186 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.081
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4V88|1|A2|C|874
4V88|1|A2|G|875
4V88|1|A2|G|876
4V88|1|A2|G|877
4V88|1|A2|G|878
*
4V88|1|A2|C|950
4V88|1|A2|A|951
4V88|1|A2|A|952
4V88|1|A2|G|953
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S1-A
- Chain AN
- 40S ribosomal protein S13
- Chain Aa
- 40S ribosomal protein S26-A
- Chain Bc
- 60S ribosomal protein L30
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