IL_4V89_029

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V89|1|AA|A|532, 4V89|1|AA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_029 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1707

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V89|1|AA|G|515
4V89|1|AA|U|516
4V89|1|AA|G|517
4V89|1|AA|C|518
4V89|1|AA|C|519
4V89|1|AA|A|520
4V89|1|AA|G|521
*
4V89|1|AA|C|528
4V89|1|AA|G|529
4V89|1|AA|G|530
4V89|1|AA|U|531
4V89|1|AA|A|532
4V89|1|AA|A|533
4V89|1|AA|U|534
4V89|1|AA|A|535
4V89|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12