IL_4V89_105

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V89|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_105 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1456

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V89|1|BA|U|1018
4V89|1|BA|U|1019
4V89|1|BA|A|1020
4V89|1|BA|A|1021
4V89|1|BA|G|1022
4V89|1|BA|U|1023
4V89|1|BA|G|1024
*
4V89|1|BA|C|1140
4V89|1|BA|U|1141
4V89|1|BA|A|1142
4V89|1|BA|A|1143
4V89|1|BA|A|1144

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BN

50S ribosomal protein L13