IL_4V89_107

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V89|1|BA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V89_107 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.089

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V89|1|BA|G|1031
4V89|1|BA|A|1032
4V89|1|BA|U|1033
4V89|1|BA|G|1034
*
4V89|1|BA|C|1121
4V89|1|BA|G|1122
4V89|1|BA|C|1123

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B8

50S ribosomal protein L36

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L16