IL_4V8A_317
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8A_317 not in the Motif Atlas
- Homologous match to IL_5J7L_034
- Geometric discrepancy: 0.0812
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8A|1|DA|G|673
4V8A|1|DA|G|674
4V8A|1|DA|A|675
4V8A|1|DA|A|676
4V8A|1|DA|U|677
4V8A|1|DA|U|678
*
4V8A|1|DA|A|712
4V8A|1|DA|G|713
4V8A|1|DA|G|714
4V8A|1|DA|A|715
4V8A|1|DA|A|716
4V8A|1|DA|C|717
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain DF
- 30S ribosomal protein S6
- Chain DK
- 30S ribosomal protein S11
- Chain DR
- 30S ribosomal protein S18
Coloring options: