IL_4V8D_213

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4V8D|1|CA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_213 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0873

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8D|1|CA|G|662
4V8D|1|CA|A|663
4V8D|1|CA|G|664
4V8D|1|CA|A|665
4V8D|1|CA|G|666
*
4V8D|1|CA|U|740
4V8D|1|CA|G|741
4V8D|1|CA|G|742
4V8D|1|CA|U|743

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S6

Chain CR

30S RIBOSOMAL PROTEIN S15

Chain CU

30S RIBOSOMAL PROTEIN S18