IL_4V8E_012

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V8E|1|AA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_012 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1351

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8E|1|AA|C|280
4V8E|1|AA|G|281
4V8E|1|AA|A|282
4V8E|1|AA|A|283
4V8E|1|AA|U|284
*
4V8E|1|AA|A|357
4V8E|1|AA|U|358
4V8E|1|AA|A|359
4V8E|1|AA|G|360

Current chains

Chain AA

RNA (2912-MER)

Nearby chains