IL_4V8E_015

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V8E|1|AA|U|504, 4V8E|1|AA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_015 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.076

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V8E|1|AA|G|481
4V8E|1|AA|A|482
4V8E|1|AA|A|483
4V8E|1|AA|C|484
*
4V8E|1|AA|G|496
4V8E|1|AA|A|497
4V8E|1|AA|G|498
4V8E|1|AA|U|499
4V8E|1|AA|G|500
4V8E|1|AA|A|501
4V8E|1|AA|A|502
4V8E|1|AA|A|503
4V8E|1|AA|U|504
4V8E|1|AA|A|505
4V8E|1|AA|G|506
4V8E|1|AA|A|507
4V8E|1|AA|G|508
4V8E|1|AA|C|509

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AS

50S ribosomal protein L22

Chain AU

50S ribosomal protein L24