IL_4V8E_028

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_028 not in the Motif Atlas

Homologous match to IL_7RQB_027

Geometric discrepancy: 0.2105

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|AA|U|858
4V8E|1|AA|G|859
4V8E|1|AA|U|860
4V8E|1|AA|A|861
4V8E|1|AA|G|862
*
4V8E|1|AA|C|915
4V8E|1|AA|G|916
4V8E|1|AA|A|917
4V8E|1|AA|A|918
4V8E|1|AA|G|919

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A3

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AP

50S ribosomal protein L16