IL_4V8E_043

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V8E|1|AA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_043 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.373

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

4V8E|1|AA|G|1087
4V8E|1|AA|A|1088
4V8E|1|AA|G|1089
4V8E|1|AA|U|1090
4V8E|1|AA|G|1091
*
4V8E|1|AA|C|1100
4V8E|1|AA|U|1101
4V8E|1|AA|C|1102

Current chains

Chain AA

RNA (2912-MER)

Nearby chains