IL_4V8E_131

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V8E|1|BA|U|244, 4V8E|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_131 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0942

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V8E|1|BA|C|242
4V8E|1|BA|A|243
4V8E|1|BA|U|244
4V8E|1|BA|C|245
4V8E|1|BA|A|246
4V8E|1|BA|G|247
*
4V8E|1|BA|C|277
4V8E|1|BA|G|278
4V8E|1|BA|A|279
4V8E|1|BA|C|280
4V8E|1|BA|G|281
4V8E|1|BA|A|282
4V8E|1|BA|C|283
4V8E|1|BA|G|284

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BT

30S RIBOSOMAL PROTEIN S17