IL_4V8E_138

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_138 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.1684

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8E|1|BA|G|446
4V8E|1|BA|G|447
4V8E|1|BA|A|448
4V8E|1|BA|C|449
4V8E|1|BA|G|450
*
4V8E|1|BA|C|483
4V8E|1|BA|G|484
4V8E|1|BA|G|485
4V8E|1|BA|U|486
4V8E|1|BA|A|487
4V8E|1|BA|C|488

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S4

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain CA

Large subunit ribosomal RNA; LSU rRNA