IL_4V8E_199

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V8E|1|CA|U|530, 4V8E|1|CA|G|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_199 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0715

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V8E|1|CA|G|508
4V8E|1|CA|A|509
4V8E|1|CA|A|510
4V8E|1|CA|C|511
*
4V8E|1|CA|G|522
4V8E|1|CA|A|523
4V8E|1|CA|G|524
4V8E|1|CA|U|525
4V8E|1|CA|G|526
4V8E|1|CA|A|527
4V8E|1|CA|A|528
4V8E|1|CA|A|529
4V8E|1|CA|U|530
4V8E|1|CA|A|531
4V8E|1|CA|G|532
4V8E|1|CA|A|533
4V8E|1|CA|G|534
4V8E|1|CA|C|535

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24