3D structure

PDB id
4V8E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8E_201 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1066
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V8E|1|CA|U|630
4V8E|1|CA|U|631
4V8E|1|CA|A|632
4V8E|1|CA|A|633
4V8E|1|CA|G|634
*
4V8E|1|CA|C|644
4V8E|1|CA|G|645
4V8E|1|CA|G|646
4V8E|1|CA|A|647
4V8E|1|CA|G|648

Current chains

Chain CA
RNA (2912-MER)

Nearby chains

Chain CF
50S ribosomal protein L4
Chain CO
50S ribosomal protein L15

Coloring options:


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