IL_4V8E_225
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4V8E|1|CA|U|1073, 4V8E|1|CA|A|1174, 4V8E|1|CA|U|1177
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8E_225 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0886
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V8E|1|CA|G|1071
4V8E|1|CA|G|1072
4V8E|1|CA|U|1073
4V8E|1|CA|A|1074
4V8E|1|CA|A|1075
4V8E|1|CA|A|1076
4V8E|1|CA|G|1077
*
4V8E|1|CA|C|1171
4V8E|1|CA|G|1172
4V8E|1|CA|A|1173
4V8E|1|CA|A|1174
4V8E|1|CA|A|1175
4V8E|1|CA|A|1176
4V8E|1|CA|U|1177
4V8E|1|CA|G|1178
4V8E|1|CA|A|1179
4V8E|1|CA|U|1180
4V8E|1|CA|C|1181
4V8E|1|CA|G|1182
4V8E|1|CA|G|1183
4V8E|1|CA|G|1184
4V8E|1|CA|G|1185
4V8E|1|CA|C|1186
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain CB
- 5S ribosomal RNA; 5S rRNA
- Chain CE
- 50S ribosomal protein L3
- Chain CM
- 50S ribosomal protein L13
- Chain CP
- 50S ribosomal protein L16
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