IL_4V8E_227

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V8E|1|CA|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_227 not in the Motif Atlas

Geometric match to IL_5J7L_284

Geometric discrepancy: 0.3638

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V8E|1|CA|C|1090
4V8E|1|CA|G|1091
4V8E|1|CA|A|1092
4V8E|1|CA|A|1093
4V8E|1|CA|G|1094
4V8E|1|CA|A|1095
4V8E|1|CA|C|1096
4V8E|1|CA|A|1097
4V8E|1|CA|G|1098
*
4V8E|1|CA|U|1155
4V8E|1|CA|C|1156
4V8E|1|CA|G|1157
4V8E|1|CA|A|1158
4V8E|1|CA|G|1159

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CH

50S ribosomal protein L6