IL_4V8E_229

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V8E|1|CA|A|1135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_229 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.3245

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8E|1|CA|G|1134
4V8E|1|CA|A|1135
4V8E|1|CA|G|1136
4V8E|1|CA|U|1137
4V8E|1|CA|G|1138
*
4V8E|1|CA|C|1147
4V8E|1|CA|U|1148
4V8E|1|CA|C|1149

Current chains

Chain CA

RNA (2912-MER)

Nearby chains