IL_4V8E_233

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V8E|1|CA|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_233 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1218

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V8E|1|CA|C|1254
4V8E|1|CA|G|1255
4V8E|1|CA|A|1256
4V8E|1|CA|U|1257
4V8E|1|CA|G|1258
4V8E|1|CA|A|1259
4V8E|1|CA|A|1260
4V8E|1|CA|G|1261
*
4V8E|1|CA|U|1281
4V8E|1|CA|G|1282
4V8E|1|CA|G|1283
4V8E|1|CA|A|1284
4V8E|1|CA|G|1285

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C1

50S ribosomal protein L20