IL_4V8E_237

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4V8E|1|CA|G|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_237 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0786

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V8E|1|CA|G|1366
4V8E|1|CA|C|1367
4V8E|1|CA|A|1368
4V8E|1|CA|A|1369
4V8E|1|CA|U|1370
*
4V8E|1|CA|A|1378
4V8E|1|CA|G|1379
4V8E|1|CA|C|1380

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CS

50S ribosomal protein L22

Chain CT

50S ribosomal protein L23