IL_4V8E_238

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V8E|1|CA|A|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_238 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.061

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V8E|1|CA|C|1398
4V8E|1|CA|U|1399
4V8E|1|CA|A|1400
4V8E|1|CA|A|1401
4V8E|1|CA|G|1402
*
4V8E|1|CA|C|1423
4V8E|1|CA|G|1424
4V8E|1|CA|A|1425
4V8E|1|CA|A|1426
4V8E|1|CA|G|1427

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2