IL_4V8E_239

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_239 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.1989

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4V8E|1|CA|U|1404
4V8E|1|CA|G|1405
4V8E|1|CA|A|1406
4V8E|1|CA|A|1407
4V8E|1|CA|G|1408
*
4V8E|1|CA|C|1417
4V8E|1|CA|G|1418
4V8E|1|CA|U|1419
4V8E|1|CA|A|1420
4V8E|1|CA|G|1421

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2

Chain CZ

50S ribosomal protein L28