IL_4V8E_249

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V8E|1|CA|C|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_249 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.3128

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8E|1|CA|G|1573
4V8E|1|CA|G|1574
4V8E|1|CA|A|1575
4V8E|1|CA|A|1576
4V8E|1|CA|G|1577
*
4V8E|1|CA|U|1588
4V8E|1|CA|G|1589
4V8E|1|CA|A|1590
4V8E|1|CA|C|1591
4V8E|1|CA|A|1592
4V8E|1|CA|A|1593
4V8E|1|CA|C|1594

Current chains

Chain CA

RNA (2912-MER)

Nearby chains