IL_4V8E_253

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V8E|1|CA|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_253 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0899

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V8E|1|CA|A|1717
4V8E|1|CA|C|1718
4V8E|1|CA|U|1719
4V8E|1|CA|C|1720
4V8E|1|CA|U|1721
4V8E|1|CA|G|1722
*
4V8E|1|CA|C|2013
4V8E|1|CA|U|2014
4V8E|1|CA|G|2015
4V8E|1|CA|U|2016

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CN

50S ribosomal protein L14