IL_4V8E_260

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_260 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.155

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V8E|1|CA|U|1883
4V8E|1|CA|C|1884
4V8E|1|CA|A|1885
4V8E|1|CA|A|1886
4V8E|1|CA|G|1887
*
4V8E|1|CA|C|1910
4V8E|1|CA|G|1911
4V8E|1|CA|A|1912
4V8E|1|CA|A|1913
4V8E|1|CA|G|1914

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain DD

TRNA-TYR