IL_4V8E_261

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_261 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1216

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V8E|1|CA|G|1888
4V8E|1|CA|G|1889
4V8E|1|CA|G|1890
4V8E|1|CA|A|1891
4V8E|1|CA|G|1892
*
4V8E|1|CA|C|1905
4V8E|1|CA|G|1906
4V8E|1|CA|A|1907
4V8E|1|CA|A|1908
4V8E|1|CA|C|1909

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CZ

50S ribosomal protein L28

Chain DD

Transfer RNA; tRNA