IL_4V8E_262

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_262 not in the Motif Atlas

Homologous match to IL_5J7L_318

Geometric discrepancy: 0.096

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

4V8E|1|CA|G|1956
4V8E|1|CA|C|1957
*
4V8E|1|CA|G|1987
4V8E|1|CA|C|1988
4V8E|1|CA|A|1989
4V8E|1|CA|C|1990

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DB

TRNA-TYR

Chain DC

Transfer RNA; tRNA