IL_4V8E_265

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V8E|1|CA|C|2078, 4V8E|1|CA|C|2625, 4V8E|1|CA|U|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8E_265 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.0969

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8E|1|CA|A|2077
4V8E|1|CA|C|2078
4V8E|1|CA|G|2079
4V8E|1|CA|A|2080
*
4V8E|1|CA|U|2624
4V8E|1|CA|C|2625
4V8E|1|CA|U|2626
4V8E|1|CA|A|2627
4V8E|1|CA|U|2628

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3

Chain CS

50S ribosomal protein L22